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    ssDNA-binding transcriptional regulator [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830783, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ssDNA-binding transcriptional regulator
    Primary source
    TAIR:AT5G09240
    Locus tag
    AT5G09240
    See related
    Araport:AT5G09240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T2K12.3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (2873660..2874989, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene sirtuin 2 Neighboring gene ssDNA-binding transcriptional regulator Neighboring gene vacuolar protein sorting-associated protein 20.2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_120960.3
    NM_180467.3
    NM_203026.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of transcription initiation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ssDNA-binding transcriptional regulator
    NP_196486.1
    • ssDNA-binding transcriptional regulator; FUNCTIONS IN: transcription coactivator activity, binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Transcriptional coactivator p15 (InterPro:IPR003173); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT5G09250.1); Has 231 Blast hits to 228 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 36; Plants - 91; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
    NP_850798.2
    • ssDNA-binding transcriptional regulator; FUNCTIONS IN: transcription coactivator activity, binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Transcriptional coactivator p15 (InterPro:IPR003173); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT5G09250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974755.1
    • ssDNA-binding transcriptional regulator; FUNCTIONS IN: transcription coactivator activity, binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Transcriptional coactivator p15 (InterPro:IPR003173); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT5G09250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2873660..2874989 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180467.3 → NP_850798.2  ssDNA-binding transcriptional regulator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850798.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFH2, F4KCI8
      Conserved Domains (1) summary
      pfam02229
      Location:47 → 89
      PC4; Transcriptional Coactivator p15 (PC4)

    2. NM_203026.3 → NP_974755.1  ssDNA-binding transcriptional regulator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974755.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KCI9
      Conserved Domains (1) summary
      pfam02229
      Location:47 → 82
      PC4; Transcriptional Coactivator p15 (PC4)

    3. NM_120960.3 → NP_196486.1  ssDNA-binding transcriptional regulator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196486.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FZJ2, A0A7G2FBC1, Q9FY90
      Conserved Domains (1) summary
      pfam02229
      Location:47 → 96
      PC4; Transcriptional Coactivator p15 (PC4)
    Nucleotide Protein
    Heading Accession and Version

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