U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    alpha/beta-Hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827278, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    alpha/beta-Hydrolases superfamily protein
    Primary source
    TAIR:AT4G15955
    Locus tag
    AT4G15955
    See related
    Araport:AT4G15955
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (9043712..9045599, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RNA polymerase II, Rpb4, core protein Neighboring gene maternally expressed family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    NM_001084929.5
    NM_001160766.1
    NM_179062.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    alpha/beta-Hydrolases superfamily protein
    NP_001078398.1
    • alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G15960.1); Has 12101 Blast hits to 12095 proteins in 1406 species: Archae - 61; Bacteria - 8490; Metazoa - 535; Fungi - 448; Plants - 424; Viruses - 1; Other Eukaryotes - 2142 (source: NCBI BLink).
    NP_001154238.1
    • alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G15960.1); Has 12916 Blast hits to 12770 proteins in 1446 species: Archae - 61; Bacteria - 8905; Metazoa - 567; Fungi - 505; Plants - 543; Viruses - 1; Other Eukaryotes - 2334 (source: NCBI BLink).
    NP_849393.1
    • alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G15960.1); Has 12115 Blast hits to 12109 proteins in 1409 species: Archae - 61; Bacteria - 8502; Metazoa - 534; Fungi - 454; Plants - 424; Viruses - 1; Other Eukaryotes - 2139 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9043712..9045599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179062.1 → NP_849393.1  alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849393.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8GX63
      Conserved Domains (2) summary
      pfam00561
      Location:35 → 174
      Abhydrolase_1; alpha/beta hydrolase fold
      cl21494
      Location:35 → 134
      Abhydrolase; alpha/beta hydrolases

    2. NM_001160766.1 → NP_001154238.1  alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154238.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XST9, A0A654FPT3, F4JKY3
      Conserved Domains (1) summary
      COG0596
      Location:7 → 301
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]

    3. NM_001084929.5 → NP_001078398.1  alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078398.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MR06
      Conserved Domains (2) summary
      pfam00561
      Location:35 → 142
      Abhydrolase_1; alpha/beta hydrolase fold
      cl21494
      Location:35 → 134
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.