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    CW-type Zinc Finger [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827251, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CW-type Zinc Finger
    Primary source
    TAIR:AT4G15730
    Locus tag
    AT4G15730
    See related
    Araport:AT4G15730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3905C; FCAALL.370
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (8951533..8957665, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Proteinase inhibitor I25, cystatin, conserved region Neighboring gene miscRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene SCR-like 11 Neighboring gene SCR-like 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001341070.1
    NM_117664.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    CW-type Zinc Finger
    NP_193308.2
    • CW-type Zinc Finger; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 395 Blast hits to 319 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8951533..8957665 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117664.5 → NP_193308.2  CW-type Zinc Finger [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193308.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EYC7, Q8GY51
      Conserved Domains (1) summary
      pfam07496
      Location:418 → 464
      zf-CW; CW-type Zinc Finger

    2. NM_001341070.1 → NP_001329807.1  CW-type Zinc Finger [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B8V9, A0A7G2EYC7
    Nucleotide Protein
    Heading Accession and Version

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