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    PSD1 phosphatidylserine decarboxylase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827373, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PSD1
    Official Full Name
    phosphatidylserine decarboxylase 1
    Primary source
    TAIR:AT4G16700
    Locus tag
    AT4G16700
    See related
    Araport:AT4G16700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4375C; FCAALL.4; phosphatidylserine decarboxylase 1
    Summary
    Encodes a mitochondrial phosphatidylserine decarboxylase. Expressed mainly in roots and flowers.
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    Genomic context

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    See PSD1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (9395621..9398439, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene methyl esterase 16 Neighboring gene uncharacterized protein Neighboring gene glycosyltransferase family protein 28 Neighboring gene Ribosomal protein L23/L15e family protein Neighboring gene terpene synthase 02

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deficiency in phosphatidylserine decarboxylase activity in the psd1 psd2 psd3 triple mutant of Arabidopsis affects phosphatidylethanolamine accumulation in mitochondria. Nerlich A, et al. Plant Physiol, 2007 Jun. PMID 17449644, Free PMC Article
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_117771.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylserine decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylserine decarboxylase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylethanolamine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    phosphatidylserine decarboxylase 1
    NP_193403.2
    • phosphatidylserine decarboxylase 1 (PSD1); FUNCTIONS IN: phosphatidylserine decarboxylase activity; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylserine decarboxylase-related (InterPro:IPR003817), Phosphatidylserine decarboxylase (InterPro:IPR005221); Has 2996 Blast hits to 2984 proteins in 1194 species: Archae - 0; Bacteria - 2050; Metazoa - 197; Fungi - 312; Plants - 68; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9395621..9398439 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341129.1 → NP_001329522.1  phosphatidylserine decarboxylase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7Z0, A0A5S9XV33

    2. NM_117771.3 → NP_193403.2  phosphatidylserine decarboxylase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193403.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23513, Q84V22
      UniProtKB/TrEMBL
      A0A5S9XV33
      Conserved Domains (2) summary
      PLN02938
      Location:1 → 453
      PLN02938; phosphatidylserine decarboxylase
      pfam02666
      Location:177 → 449
      PS_Dcarbxylase; Phosphatidylserine decarboxylase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84V22.1

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