tRNAHis guanylyltransferase [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: tRNAHis guanylyltransferase
Primary source: TAIR:AT2G31580
Locus tag: AT2G31580
See related: Araport:AT2G31580
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T9H9.10; T9H9_10
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 14

Sequence:: Chromosome: 2; NC_003071.7 (13440842..13445932, complement)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

our results suggest that ICA1-mediated-modulation of fundamental processes such as tRNAHis maturation, modify plant growth responses to temperature changes in a quantitative and reversible manner, in natural populations.
Title: Natural Variation Identifies ICARUS1, a Universal Gene Required for Cell Proliferation and Growth at High Temperatures in Arabidopsis thaliana.

Submit: New GeneRIF Correction

General gene information

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Homology

Orthologs from OrthoDB

NM_001336337.1

Supported by ESTs:

NM_001336338.1

Supported by ESTs:

NM_001336339.1

Supported by ESTs:

NM_001336340.1

Supported by ESTs:

NM_128715.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables magnesium ion binding	IEA Inferred from Electronic Annotation more info
enables tRNA guanylyltransferase activity	IEA Inferred from Electronic Annotation more info
enables tRNA guanylyltransferase activity	TAS Traceable Author Statement more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within DNA damage response	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within G2/M transition of mitotic cell cycle	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within positive regulation of cell cycle	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in tRNA modification	IEA Inferred from Electronic Annotation more info
involved_in tRNA modification	TAS Traceable Author Statement more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info
located_in nucleoplasm	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: tRNAHis guanylyltransferase

NP_565727.2

tRNAHis guanylyltransferase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: tRNAHis guanylyltransferase (InterPro:IPR007537); BEST Arabidopsis thaliana protein match is: tRNAHis guanylyltransferase (TAIR:AT2G32320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

13440842..13445932 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_128715.3 → NP_565727.2 tRNAHis guanylyltransferase [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_565727.2

Status: REVIEWED

UniProtKB/Swiss-Prot

F4IRQ5, Q9SIQ0

UniProtKB/TrEMBL

A0A0F7PX50, A0A0F7PZZ1, A0A0F7Q2P0, A0A654EXW9

Conserved Domains (3) summary

PLN00220
Location:1 → 26

PLN00220; tubulin beta chain; Provisional

pfam04446
Location:323 → 448

Thg1; tRNAHis guanylyltransferase

pfam14413
Location:452 → 553

Thg1C; Thg1 C terminal domain
NM_001336337.1 → NP_001325126.1 tRNAHis guanylyltransferase [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A0F7Q1T6, A0A1P8B274
NM_001336338.1 → NP_001325127.1 tRNAHis guanylyltransferase [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A0F7PX50, A0A178VQE7, A0A1P8B2C6, A0A384KRU3
NM_001336339.1 → NP_001325128.1 tRNAHis guanylyltransferase [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A0F7Q1T6, A0A1P8B284
NM_001336340.1 → NP_001325129.1 tRNAHis guanylyltransferase [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A0F7PX50, A0A178VQE7, A0A1P8B2C6, A0A384KRU3