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    transcriptional regulator of RNA polII, SAGA, subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816989, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcriptional regulator of RNA polII, SAGA, subunit
    Primary source
    TAIR:AT2G24530
    Locus tag
    AT2G24530
    See related
    Araport:AT2G24530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25P17.17; F25P17_17
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (10421841..10424402)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene plasma membrane H+-ATPase Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Galactose oxidase/kelch repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Three functionally redundant plant-specific paralogs are core subunits of the SAGA histone acetyltransferase complex in Arabidopsis. Wu CJ, et al. Mol Plant, 2021 Jul 5. PMID 33737195
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_128014.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA-type complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcriptional regulator of RNA polII, SAGA, subunit
    NP_180029.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10421841..10424402
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335936.1 → NP_001324326.1  transcriptional regulator of RNA polII, SAGA, subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VYD9, A0A384KC14, A0A7G2EAU4, Q58G10
      Conserved Domains (1) summary
      pfam12767
      Location:8 → 317
      SAGA-Tad1; Transcriptional regulator of RNA polII, SAGA, subunit

    2. NM_128014.4 → NP_180029.2  transcriptional regulator of RNA polII, SAGA, subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180029.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VYD9, A0A384KC14, A0A7G2EAU4, Q58G10
      Conserved Domains (1) summary
      pfam12767
      Location:8 → 317
      SAGA-Tad1; Transcriptional regulator of RNA polII, SAGA, subunit
    Nucleotide Protein
    Heading Accession and Version

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