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    protein FLC EXPRESSOR [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817564, updated on 18-Sep-2024

    Summary

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    Official Full Name
    protein FLC EXPRESSOR
    Primary source
    TAIR:AT2G30120
    Locus tag
    AT2G30120
    See related
    Araport:AT2G30120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27E13.14; T27E13_14
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (12860147..12861971, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-activating enzyme 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Lateral organ boundaries (LOB) domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Ding L, et al. Plant Physiol, 2013 Sep. PMID 23899645, Free PMC Article
    2. The FLX gene of Arabidopsis is required for FRI-dependent activation of FLC expression. Andersson CR, et al. Plant Cell Physiol, 2008 Feb. PMID 18156133
    3. The FRIGIDA complex activates transcription of FLC, a strong flowering repressor in Arabidopsis, by recruiting chromatin modification factors. Choi K, et al. Plant Cell, 2011 Jan. PMID 21282526, Free PMC Article
    4. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001161069.1
    NM_001336242.1
    NM_128567.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    protein FLC EXPRESSOR
    NP_001154541.1
    • unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 2527 Blast hits to 2101 proteins in 358 species: Archae - 77; Bacteria - 245; Metazoa - 1087; Fungi - 215; Plants - 350; Viruses - 4; Other Eukaryotes - 549 (source: NCBI BLink).
    NP_565694.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 275 Blast hits to 241 proteins in 42 species: Archae - 4; Bacteria - 15; Metazoa - 15; Fungi - 4; Plants - 188; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12860147..12861971 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336241.1 → NP_001324954.1  protein FLC EXPRESSOR [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1P6, A0A5S9X2J8

    2. NM_001336240.1 → NP_001324955.1  protein FLC EXPRESSOR [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUP4, A0A1P8B1P9

    3. NM_001336239.1 → NP_001324952.1  protein FLC EXPRESSOR [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1N9

    4. NM_128567.3 → NP_565694.1  protein FLC EXPRESSOR [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565694.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VWA9
      Conserved Domains (1) summary
      pfam04880
      Location:27 → 79
      NUDE_C; NUDE protein, C-terminal conserved region

    5. NM_001161069.1 → NP_001154541.1  protein FLC EXPRESSOR [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154541.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IMQ0, O64735, Q93ZA1
      UniProtKB/TrEMBL
      A0A178VUP4
      Conserved Domains (1) summary
      pfam04880
      Location:27 → 79
      NUDE_C; NUDE protein, C-terminal conserved region

    6. NM_001336242.1 → NP_001324953.1  protein FLC EXPRESSOR [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VWA9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IMQ0.1

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