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    F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817543, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/RNI-like superfamily protein
    Primary source
    TAIR:AT2G29930
    Locus tag
    AT2G29930
    See related
    Araport:AT2G29930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6K5.6
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (12756326..12758558, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene pleiotropic drug resistance 3 Neighboring gene ELF4-like 1 Neighboring gene cyclophilin 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_128547.3
    NM_201833.1
    NM_201834.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box/RNI-like superfamily protein
    NP_180554.2
    • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G21990.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973562.1
    • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G21990.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973563.1
    • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G21990.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12756326..12758558 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128547.3 → NP_180554.2  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180554.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80879, Q84RK4, Q84RK5, Q84RK6
      UniProtKB/TrEMBL
      A0A178W0S1
      Conserved Domains (4) summary
      smart00579
      Location:381 → 458
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:134 → 158
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:14 → 48
      F-box; F-box domain
      pfam07723
      Location:158 → 183
      LRR_2; Leucine Rich Repeat

    2. NM_201833.1 → NP_973562.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973562.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4ILP7
      Conserved Domains (3) summary
      smart00579
      Location:261 → 338
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:14 → 38
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:38 → 63
      LRR_2; Leucine Rich Repeat

    3. NM_201834.1 → NP_973563.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973563.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80879, Q84RK4, Q84RK5, Q84RK6
      UniProtKB/TrEMBL
      A0A178W0S1
      Conserved Domains (4) summary
      smart00579
      Location:381 → 458
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:134 → 158
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:14 → 48
      F-box; F-box domain
      pfam07723
      Location:158 → 183
      LRR_2; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84RK6.1

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