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    COR413IM1 COLD REGULATED 314 INNER MEMBRANE 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839815, updated on 18-Sep-2024

    Summary

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    Official Symbol
    COR413IM1
    Official Full Name
    COLD REGULATED 314 INNER MEMBRANE 1
    Primary source
    TAIR:AT1G29395
    Locus tag
    AT1G29395
    See related
    Araport:AT1G29395
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    COLD REGULATED 314 INNER MEMBRANE 1; COLD REGULATED 314 THYLAKOID MEMBRANE 1; cold regulated 414 thylakoid membrane 1; COR413-TM1; COR414-TM1
    Summary
    Integral membrane protein in the inner envelope of chloroplasts. Provide freezing tolerance. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment.
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    Genomic context

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    See COR413IM1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (10288129..10289666, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RNA polymerase II degradation factor-like protein (DUF1296) Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene cold regulated 314 thylakoid membrane 2 Neighboring gene MEI2-like protein 5 Neighboring gene phosphoribosylanthranilate isomerase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of Cor413im proteins as novel components of the chloroplast inner envelope. Okawa K, et al. Plant Cell Environ, 2008 Oct. PMID 18643950
    2. Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis. Breton G, et al. Plant Physiol, 2003 May. PMID 12746512, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_102679.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within cold acclimation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within cold acclimation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast inner membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    COLD REGULATED 314 INNER MEMBRANE 1
    NP_564328.1
    • COLD REGULATED 314 INNER MEMBRANE 1 (COR413IM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, cellular response to water deprivation, cellular response to cold, response to abscisic acid stimulus; LOCATED IN: integral to chloroplast inner membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: cold regulated 314 thylakoid membrane 2 (TAIR:AT1G29390.1); Has 150 Blast hits to 147 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10288129..10289666 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102679.6 → NP_564328.1  COLD REGULATED 314 INNER MEMBRANE 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564328.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AL8, Q9C7R2
      UniProtKB/TrEMBL
      A0A178W3Z0, A0A5S9WD02, A0A7G2DWT1
      Conserved Domains (1) summary
      pfam05562
      Location:44 → 216
      WCOR413; Cold acclimation protein WCOR413
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94AL8.1

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