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    HIT zinc finger and PAPA-1-like domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842099, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HIT zinc finger and PAPA-1-like domain-containing protein
    Primary source
    TAIR:AT1G56460
    Locus tag
    AT1G56460
    See related
    Araport:AT1G56460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13N6.4; F13N6_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (21146236..21149805)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene nicotianamine synthase 4 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene 20S proteasome beta subunit G1 Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_104524.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Ino80 complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HIT zinc finger and PAPA-1-like domain-containing protein
    NP_001185251.1
    • HIT zinc finger; PAPA-1-like conserved region; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: HIT zinc finger; PAPA-1-like conserved region (TAIR:AT2G47350.1).
    NP_176041.2
    • HIT zinc finger; PAPA-1-like conserved region; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: HIT zinc finger; PAPA-1-like conserved region (TAIR:AT2G47350.1); Has 6888 Blast hits to 5170 proteins in 562 species: Archae - 10; Bacteria - 621; Metazoa - 2515; Fungi - 857; Plants - 398; Viruses - 26; Other Eukaryotes - 2461 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21146236..21149805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333782.1 → NP_001320733.1  HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EJ13, Q9C7X2

    2. NM_001198322.1 → NP_001185251.1  HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185251.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7N9, F4I548
      Conserved Domains (2) summary
      pfam04438
      Location:497 → 528
      zf-HIT; HIT zinc finger
      pfam04795
      Location:397 → 480
      PAPA-1; PAPA-1-like conserved region

    3. NM_104524.4 → NP_176041.2  HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176041.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7N9, Q8GYE3
      Conserved Domains (2) summary
      pfam04438
      Location:467 → 498
      zf-HIT; HIT zinc finger
      pfam04795
      Location:367 → 450
      PAPA-1; PAPA-1-like conserved region
    Nucleotide Protein
    Heading Accession and Version

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