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    RKD2 RWP-RK domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843789, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RKD2
    Official Full Name
    RWP-RK domain-containing protein
    Primary source
    TAIR:AT1G74480
    Locus tag
    AT1G74480
    See related
    Araport:AT1G74480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtRKD2; F1M20.16; F1M20_16; RWP-RK domain containing 2; UAS-TAGGED ROOT PATTERNING4; URP4
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    Genomic context

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    See RKD2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (27993032..27994178, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene Pyridine nucleotide-disulfide oxidoreductase family protein Neighboring gene Protein kinase superfamily protein Neighboring gene activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RWP-RK domain-containing protein
    NP_177588.1
    • RWP-RK domain-containing protein; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G18790.1); Has 474 Blast hits to 470 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 395; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27993032..27994178 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106108.1 → NP_177588.1  RWP-RK domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177588.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CA66
      UniProtKB/TrEMBL
      A0A178W9H3, A0A5S9WUA7, A0A7G2E5Z3
      Conserved Domains (1) summary
      pfam02042
      Location:134 → 182
      RWP-RK; RWP-RK domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CA66.1

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