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    NTMC2T5.1 N-terminal-transmembrane-C2 domain type 5.1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841448, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NTMC2T5.1
    Official Full Name
    N-terminal-transmembrane-C2 domain type 5.1
    Primary source
    TAIR:AT1G50260
    Locus tag
    AT1G50260
    See related
    Araport:AT1G50260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14I3.13; F14I3_13; N-terminal-transmembrane-C2 domain type 5.1; NTMC2TYPE5.1
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    Genomic context

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    See NTMC2T5.1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (18617593..18621957, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene B3 domain protein Neighboring gene kinase family with ARM repeat domain-containing protein Neighboring gene FTSH protease 1 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The N-coil and the globular N-terminal domain of plant ARGONAUTE1 are interaction hubs for regulatory factors. Bressendorff S, et al. Biochem J, 2023 Jul 12. PMID 37278687
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001198258.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    N-terminal-transmembrane-C2 domain type 5.1
    NP_001185187.1
    • N-terminal-transmembrane-C2 domain type 5.1 (NTMC2T5.1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2404, transmembrane (InterPro:IPR019411), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G19830.2).
    NP_175444.2
    • N-terminal-transmembrane-C2 domain type 5.1 (NTMC2T5.1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2404, transmembrane (InterPro:IPR019411), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G19830.2); Has 1179 Blast hits to 1055 proteins in 179 species: Archae - 0; Bacteria - 2; Metazoa - 322; Fungi - 255; Plants - 537; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18617593..18621957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103910.4 → NP_175444.2  N-terminal-transmembrane-C2 domain type 5.1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175444.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WKK3, A0A654EIP2, Q8L626
      Conserved Domains (1) summary
      pfam00168
      Location:401 → 480
      C2; C2 domain

    2. NM_001198258.1 → NP_001185187.1  N-terminal-transmembrane-C2 domain type 5.1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185187.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WKK3, A0A654EIP2, F4I4Z6
      Conserved Domains (1) summary
      pfam00168
      Location:360 → 439
      C2; C2 domain
    Nucleotide Protein
    Heading Accession and Version

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