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    ESP1 hydroxyproline-rich glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843720, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ESP1
    Official Full Name
    hydroxyproline-rich glycoprotein family protein
    Primary source
    TAIR:AT1G73840
    Locus tag
    AT1G73840
    See related
    Araport:AT1G73840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ENHANCED SILENCING PHENOTYPE 1; F25P22.26; F25P22_26
    Summary
    Resembles the CstF64 family of RNA processing factors that are conserved between yeast and mammals. In mammals, CstF64 is a component of the CstF complex which is required for mRNA 3'end formation along with other factors.
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    Genomic context

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    See ESP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (27763617..27766372, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene BR enhanced expression 3 Neighboring gene ncRNA Neighboring gene DNA ligase (DUF1666) Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis CstF64-Like RSR1/ESP1 Protein Participates in Glucose Signaling and Flowering Time Control. Funck D, et al. Front Plant Sci, 2012. PMID 22629280, Free PMC Article
    2. Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis. Herr AJ, et al. Proc Natl Acad Sci U S A, 2006 Oct 10. PMID 17008405, Free PMC Article
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001334607.1
    NM_106044.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in mRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulatory ncRNA-mediated post-transcriptional gene silencing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to glucose IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to glucose IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hydroxyproline-rich glycoprotein family protein
    NP_177525.2
    • ENHANCED SILENCING PHENOTYPE 1 (ESP1); BEST Arabidopsis thaliana protein match is: cleavage stimulating factor 64 (TAIR:AT1G71800.1); Has 17088 Blast hits to 12613 proteins in 677 species: Archae - 8; Bacteria - 992; Metazoa - 8093; Fungi - 4211; Plants - 1941; Viruses - 196; Other Eukaryotes - 1647 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27763617..27766372 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106044.6 → NP_177525.2  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177525.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W8Y4, A0A7G2E4V4, Q8VYM7
      Conserved Domains (3) summary
      pfam09770
      Location:71 → 253
      PAT1; Topoisomerase II-associated protein PAT1
      pfam14304
      Location:355 → 388
      CSTF_C; Transcription termination and cleavage factor C-terminal
      pfam14327
      Location:15 → 72
      CSTF2_hinge; Hinge domain of cleavage stimulation factor subunit 2

    2. NM_001334607.1 → NP_001320490.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMZ0, Q9C9S8
    Nucleotide Protein
    Heading Accession and Version

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