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    emb1273 embryo defective 1273 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841375, updated on 18-Sep-2024

    Summary

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    Official Symbol
    emb1273
    Official Full Name
    embryo defective 1273
    Primary source
    TAIR:AT1G49510
    Locus tag
    AT1G49510
    See related
    Araport:AT1G49510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo defective 1273; F13F21.5; F13F21_5
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    Genomic context

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    See emb1273 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (18326846..18328714)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene transcription initiation factor TFIID subunit 1b-like protein Neighboring gene SWIB complex BAF60b domain-containing protein Neighboring gene ncRNA Neighboring gene geranylgeranyl pyrophosphate synthase 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtDPG1 is involved in the salt stress response of Arabidopsis seedling through ABI4. Yi J, et al. Plant Sci, 2019 Oct. PMID 31481194
    2. The novel protein DELAYED PALE-GREENING1 is required for early chloroplast biogenesis in Arabidopsis thaliana. Liu D, et al. Sci Rep, 2016 May 10. PMID 27160321, Free PMC Article
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. involved in the salt stress response of seedlings through ABI4
      Title: AtDPG1 is involved in the salt stress response of Arabidopsis seedling through ABI4.
    2. AtDPG1 plays an essential role in early chloroplast biogenesis.[DPG1]
      Title: The novel protein DELAYED PALE-GREENING1 is required for early chloroplast biogenesis in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001333389.1
    NM_103839.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to salt stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    embryo defective 1273
    NP_175374.2
    • embryo defective 1273 (emb1273); Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18326846..18328714
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333388.1 → NP_001322924.1  embryo defective 1273 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVI5

    2. NM_103839.5 → NP_175374.2  embryo defective 1273 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175374.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W402, A0A654EGX1, Q9XIB8

    3. NM_001333389.1 → NP_001322923.1  embryo defective 1273 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W402, A0A654EGX1, Q9XIB8
    Nucleotide Protein
    Heading Accession and Version

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