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    PUM20 pumilio 20 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838764, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PUM20
    Official Full Name
    pumilio 20
    Primary source
    TAIR:AT1G21620
    Locus tag
    AT1G21620
    See related
    Araport:AT1G21620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    APUM20; F24J8.22; pumilio 20
    Summary
    Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
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    Genomic context

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    See PUM20 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (7579129..7580171)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein Neighboring gene plastid transcriptionally active 6 Neighboring gene wound-responsive family protein Neighboring gene Calcium-binding EF hand family protein Neighboring gene NAD kinase 2 Neighboring gene Preprotein translocase SecA family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pumilio 20
    NP_173581.1
    • pumilio 20 (PUM20); FUNCTIONS IN: RNA binding, binding; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 18 (TAIR:AT5G60110.1); Has 2073 Blast hits to 1204 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 801; Fungi - 431; Plants - 579; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7579129..7580171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102011.1 → NP_173581.1  pumilio 20 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173581.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4T6, A0A5S9VES5, A0A654ECP7
      Conserved Domains (1) summary
      cl29546
      Location:92 → 304
      Pumilio; Pumilio-family RNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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