U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CYP79F2 cytochrome P450, family 79, subfamily F, polypeptide 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838210, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CYP79F2
    Official Full Name
    cytochrome P450, family 79, subfamily F, polypeptide 2
    Primary source
    TAIR:AT1G16400
    Locus tag
    AT1G16400
    See related
    Araport:AT1G16400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''cytochrome P450; cytochrome P450; CYTOCHROME P450 79F2; F3O9.20; F3O9_20; family 79; polypeptide 2; polypeptide 2''; subfamily F
    Summary
    Encodes cytochrome P450 CYP79F2.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CYP79F2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (5605044..5607498)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene organic cation/carnitine transporter 6 Neighboring gene Cation/hydrogen exchanger family protein Neighboring gene organic cation/carnitine transporter 3 Neighboring gene cytochrome p450 79f1 Neighboring gene metacaspase 8

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. CYP79F1 and CYP79F2 have distinct functions in the biosynthesis of aliphatic glucosinolates in Arabidopsis. Chen S, et al. Plant J, 2003 Mar. PMID 12609033
    2. Bus, a bushy Arabidopsis CYP79F1 knockout mutant with abolished synthesis of short-chain aliphatic glucosinolates. Reintanz B, et al. Plant Cell, 2001 Feb. PMID 11226190, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help
    NM_101506.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within glucosinolate biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cytochrome P450, family 79, subfamily F, polypeptide 2
    NP_563995.2
    • ''cytochrome P450, family 79, subfamily F, polypeptide 2'' (CYP79F2); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome p450 79f1 (TAIR:AT1G16410.1); Has 27578 Blast hits to 27450 proteins in 1508 species: Archae - 44; Bacteria - 2254; Metazoa - 10521; Fungi - 5390; Plants - 8520; Viruses - 3; Other Eukaryotes - 846 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5605044..5607498
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101506.3 → NP_563995.2  cytochrome P450, family 79, subfamily F, polypeptide 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563995.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94JZ4, Q9FUY7, Q9SA39
      UniProtKB/TrEMBL
      A0A178WH40
      Conserved Domains (1) summary
      PLN03018
      Location:4 → 537
      PLN03018; homomethionine N-hydroxylase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FUY7.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools