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    Target SNARE coiled-coil domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838191, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Target SNARE coiled-coil domain protein
    Primary source
    TAIR:AT1G16225
    Locus tag
    AT1G16225
    See related
    Araport:AT1G16225
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (5550791..5552414, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Rad23 UV excision repair protein family Neighboring gene coiled-coil protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene ncRNA Neighboring gene Target SNARE coiled-coil domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Target SNARE coiled-coil domain protein
    NP_683311.2
    • Target SNARE coiled-coil domain protein; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: Target SNARE coiled-coil domain protein (TAIR:AT1G16230.1); Has 135 Blast hits to 135 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 37; Plants - 88; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5550791..5552414 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332213.1 → NP_001323129.1  Target SNARE coiled-coil domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4U6, A0A1P8AW43, A0A384KBP6, A0A5S9UQK9, A0A7G2DVT7
      Conserved Domains (1) summary
      cd15841
      Location:135 → 192
      SNARE_Qc; SNARE motif, subgroup Qc

    2. NM_001332214.1 → NP_001323130.1  Target SNARE coiled-coil domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AW52

    3. NM_148470.3 → NP_683311.2  Target SNARE coiled-coil domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_683311.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DVT7, F4I2U7
      Conserved Domains (1) summary
      cd15841
      Location:111 → 168
      SNARE_Qc; SNARE motif, subgroup Qc
    Nucleotide Protein
    Heading Accession and Version

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