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    Trm112p-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844155, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Trm112p-like protein
    Primary source
    TAIR:AT1G78190
    Locus tag
    AT1G78190
    See related
    Araport:AT1G78190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T11I11.13; T11I11_13
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (29418620..29418994, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Roles of Trm9- and ALKBH8-like proteins in the formation of modified wobble uridines in Arabidopsis tRNA. Leihne V, et al. Nucleic Acids Res, 2011 Sep 1. PMID 21653555, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_106469.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Trm112p-like protein
    NP_177943.1
    • Trm112p-like protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); BEST Arabidopsis thaliana protein match is: Trm112p-like protein (TAIR:AT1G22270.1); Has 414 Blast hits to 414 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 129; Plants - 62; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29418620..29418994 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106469.1 → NP_177943.1  Trm112p-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177943.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7Y226, Q9C9R3
      UniProtKB/TrEMBL
      A0A178WBP3, A0A5S9WVE0
      Conserved Domains (1) summary
      cd21089
      Location:2 → 119
      Trm112-like; eukaryotic tRNA methyltransferase 112, a partner protein of both rRNA/tRNA and protein methyltransferases, and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C9R3.1

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