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    rRNA-processing EFG1-like protein (DUF2361) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839575, updated on 18-Sep-2024

    Summary

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    Official Full Name
    rRNA-processing EFG1-like protein (DUF2361)
    Primary source
    TAIR:AT1G04230
    Locus tag
    AT1G04230
    See related
    Araport:AT1G04230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (1125515..1128788)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ncRNA Neighboring gene 3-ketoacyl-CoA synthase 2 Neighboring gene AUX/IAA transcriptional regulator family protein Neighboring gene ncRNA Neighboring gene AUX/IAA transcriptional regulator family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001331469.1
    NM_100304.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    rRNA-processing EFG1-like protein (DUF2361)
    NP_171919.3
    • Protein of unknown function (DUF2361); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2361 (InterPro:IPR019310); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2361) (TAIR:AT5G43720.1); Has 1174 Blast hits to 818 proteins in 194 species: Archae - 0; Bacteria - 26; Metazoa - 566; Fungi - 310; Plants - 87; Viruses - 6; Other Eukaryotes - 179 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1125515..1128788
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100304.5 → NP_171919.3  rRNA-processing EFG1-like protein (DUF2361) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171919.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W126, A0A5S9SIP0, A0A654E8Q3, Q94K10
      Conserved Domains (1) summary
      pfam10153
      Location:38 → 150
      Efg1; rRNA-processing protein Efg1

    2. NM_001331469.1 → NP_001320736.1  rRNA-processing EFG1-like protein (DUF2361) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANS3, A0A5S9SIP0, A0A654E8Q3
    Nucleotide Protein
    Heading Accession and Version

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