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    retrotransposon gag [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842409, updated on 18-Sep-2024

    Summary

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    Official Full Name
    retrotransposon gag
    Primary source
    TAIR:AT1G61160
    Locus tag
    AT1G61160
    See related
    Araport:AT1G61160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11P17.19; F11P17_19
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (22544868..22546230, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 32 Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein Neighboring gene LisH and RanBPM domains containing protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_104797.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    retrotransposon gag
    NP_176311.2
    • CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22544868..22546230 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104797.2 → NP_176311.2  retrotransposon gag [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176311.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EJZ1, Q3E7J8
      Conserved Domains (1) summary
      pfam03732
      Location:63 → 105
      Retrotrans_gag; Retrotransposon gag protein
    Nucleotide Protein
    Heading Accession and Version

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