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    LisH and RanBPM domains containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842408, updated on 18-Sep-2024

    Summary

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    Official Full Name
    LisH and RanBPM domains containing protein
    Primary source
    TAIR:AT1G61150
    Locus tag
    AT1G61150
    See related
    Araport:AT1G61150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11P17.12; F11P17_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (22542402..22545661)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 32 Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein Neighboring gene retrotransposon gag Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactions of an Arabidopsis RanBPM homologue with LisH-CTLH domain proteins revealed high conservation of CTLH complexes in eukaryotes. Tomaštíková E, et al. BMC Plant Biol, 2012 Jun 7. PMID 22676313, Free PMC Article
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084281.2
    NM_001084282.1
    NM_001084283.2
    NM_001084284.2
    NM_001333934.1
    NM_001333935.1
    NM_001333936.1
    NM_001333937.1
    NM_104796.5
    NM_202332.3
    NM_202333.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LisH and RanBPM domains containing protein
    NP_001077750.1
    • LisH and RanBPM domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 983 Blast hits to 936 proteins in 195 species: Archae - 2; Bacteria - 0; Metazoa - 453; Fungi - 227; Plants - 227; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
    NP_001077751.1
    • LisH and RanBPM domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 982 Blast hits to 935 proteins in 192 species: Archae - 2; Bacteria - 0; Metazoa - 453; Fungi - 226; Plants - 227; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
    NP_001077753.1
    • LisH and RanBPM domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 726 Blast hits to 711 proteins in 198 species: Archae - 0; Bacteria - 50; Metazoa - 282; Fungi - 123; Plants - 213; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
    NP_001319279.1
    • LisH and RanBPM domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 983 Blast hits to 936 proteins in 195 species: Archae - 2; Bacteria - 0; Metazoa - 453; Fungi - 227; Plants - 227; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
    NP_176310.3
    • LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 1004 Blast hits to 957 proteins in 195 species: Archae - 2; Bacteria - 0; Metazoa - 468; Fungi - 227; Plants - 231; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
    NP_974061.1
    • LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974062.1
    • LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22542402..22545661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333936.1 → NP_001319279.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E1Y5

    2. NM_001333937.1 → NP_001322515.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E1Y5

    3. NM_001084281.2 → NP_001077750.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077750.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E1Y5
      Conserved Domains (4) summary
      smart00668
      Location:61 → 118
      CTLH; C-terminal to LisH motif
      smart00757
      Location:114 → 210
      CRA; CT11-RanBPM
      pfam08513
      Location:25 → 51
      LisH; LisH
      pfam10607
      Location:61 → 205
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    4. NM_104796.5 → NP_176310.3  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176310.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQF1, O22730, Q3E7M2, Q84WK5
      UniProtKB/TrEMBL
      A0A5S9WRG4, A0A654EQ15
      Conserved Domains (2) summary
      pfam08513
      Location:42 → 68
      LisH; LisH
      pfam10607
      Location:78 → 222
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    5. NM_001084283.2 → NP_001077752.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077752.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E1Y5
      Conserved Domains (4) summary
      smart00668
      Location:61 → 118
      CTLH; C-terminal to LisH motif
      smart00757
      Location:114 → 210
      CRA; CT11-RanBPM
      pfam08513
      Location:25 → 51
      LisH; LisH
      pfam10607
      Location:61 → 205
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    6. NM_001084282.1 → NP_001077751.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077751.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E1Y5, A8MQN5
      Conserved Domains (4) summary
      smart00668
      Location:55 → 112
      CTLH; C-terminal to LisH motif
      smart00757
      Location:108 → 204
      CRA; CT11-RanBPM
      pfam08513
      Location:19 → 45
      LisH; LisH
      pfam10607
      Location:55 → 199
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    7. NM_202332.3 → NP_974061.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974061.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E1Y5
      Conserved Domains (4) summary
      smart00668
      Location:61 → 118
      CTLH; C-terminal to LisH motif
      smart00757
      Location:114 → 210
      CRA; CT11-RanBPM
      pfam08513
      Location:25 → 51
      LisH; LisH
      pfam10607
      Location:61 → 205
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    8. NM_001333934.1 → NP_001322514.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQF1, O22730, Q3E7M2, Q84WK5
      UniProtKB/TrEMBL
      A0A5S9WRG4, A0A654EQ15
      Conserved Domains (2) summary
      pfam08513
      Location:42 → 68
      LisH; LisH
      pfam10607
      Location:78 → 222
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    9. NM_202333.2 → NP_974062.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974062.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HTG9
      Conserved Domains (3) summary
      smart00668
      Location:28 → 85
      CTLH; C-terminal to LisH motif
      smart00757
      Location:81 → 177
      CRA; CT11-RanBPM
      pfam10607
      Location:28 → 172
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    10. NM_001084284.2 → NP_001077753.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077753.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HTG9
      Conserved Domains (3) summary
      smart00668
      Location:28 → 85
      CTLH; C-terminal to LisH motif
      smart00757
      Location:81 → 177
      CRA; CT11-RanBPM
      pfam10607
      Location:28 → 172
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    11. NM_001333935.1 → NP_001322513.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQF1, O22730, Q3E7M2, Q84WK5
      UniProtKB/TrEMBL
      A0A5S9WRG4, A0A654EQ15
      Conserved Domains (2) summary
      pfam08513
      Location:42 → 68
      LisH; LisH
      pfam10607
      Location:78 → 222
      CLTH; CTLH/CRA C-terminal to LisH motif domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84WK5.1

    Gene LinkOut

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