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    beta-1,3-n-acetylglucosaminyltransferase radical fringe protein, putative (DUF604) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840219, updated on 18-Sep-2024

    Summary

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    Official Full Name
    beta-1,3-n-acetylglucosaminyltransferase radical fringe protein, putative (DUF604)
    Primary source
    TAIR:AT1G33250
    Locus tag
    AT1G33250
    See related
    Araport:AT1G33250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16O9.11; T16O9_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (12057198..12059792, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GT-2-like 1 Neighboring gene miscRNA Neighboring gene Protein kinase superfamily protein Neighboring gene Transmembrane proteins 14C Neighboring gene Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_103053.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    beta-1,3-n-acetylglucosaminyltransferase radical fringe protein, putative (DUF604)
    NP_174595.1
    • Protein of unknown function (DUF604); FUNCTIONS IN: transferase activity, transferring glycosyl groups; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G23490.1); Has 724 Blast hits to 713 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 271; Fungi - 168; Plants - 272; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12057198..12059792 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103053.4 → NP_174595.1  beta-1,3-n-acetylglucosaminyltransferase radical fringe protein, putative (DUF604) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174595.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFL6, A0A5S9WIH0, A0A654EF01, Q9C881
      Conserved Domains (1) summary
      cl21608
      Location:17 → 548
      Galactosyl_T; Galactosyltransferase
    Nucleotide Protein
    Heading Accession and Version

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