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    F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843039, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/RNI-like superfamily protein
    Primary source
    TAIR:AT1G67190
    Locus tag
    AT1G67190
    See related
    Araport:AT1G67190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5A8.10; F5A8_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (25132498..25134470)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene sarcolemmal membrane-associated protein Neighboring gene zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001198409.2
    NM_105389.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box/RNI-like superfamily protein
    NP_001185338.1
    • F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G10780.1).
    NP_176890.1
    • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G10780.1); Has 147 Blast hits to 147 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25132498..25134470
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198409.2 → NP_001185338.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185338.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GWJ9, Q9ZW88
      UniProtKB/TrEMBL
      A0A178WKU6, A0A5S9WSI0, A0A7G2E735
      Conserved Domains (4) summary
      sd00032
      Location:151 → 175
      LRR_2; leucine-rich repeat [structural motif]
      sd00033
      Location:128 → 147
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12937
      Location:1 → 40
      F-box-like
      pfam13855
      Location:126 → 183
      LRR_8; Leucine rich repeat

    2. NM_105389.4 → NP_176890.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176890.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GWJ9, Q9ZW88
      UniProtKB/TrEMBL
      A0A178WKU6, A0A5S9WSI0, A0A7G2E735
      Conserved Domains (4) summary
      sd00032
      Location:151 → 175
      LRR_2; leucine-rich repeat [structural motif]
      sd00033
      Location:128 → 147
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12937
      Location:1 → 40
      F-box-like
      pfam13855
      Location:126 → 183
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZW88.1

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