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    RR19 response regulator 19 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841342, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RR19
    Official Full Name
    response regulator 19
    Primary source
    TAIR:AT1G49190
    Locus tag
    AT1G49190
    See related
    Araport:AT1G49190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARR19; F27J15.4; F27J15_4; response regulator 19
    Summary
    member of Response Regulator: B- Type
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    Genomic context

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    See RR19 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (18191267..18193782)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene protein kinase family protein Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Type-B response regulators display overlapping expression patterns in Arabidopsis. Mason MG, et al. Plant Physiol, 2004 Jun. PMID 15173562, Free PMC Article
    2. Two-component signal transduction pathways in Arabidopsis. Hwang I, et al. Plant Physiol, 2002 Jun. PMID 12068096, Free PMC Article
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables phosphorelay response regulator activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cytokinin-activated signaling pathway TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    response regulator 19
    NP_001185179.1
    • response regulator 19 (RR19); CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: response regulator 20 (TAIR:AT3G62670.1).
    NP_001319180.1
    • response regulator 19 (RR19); CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: response regulator 20 (TAIR:AT3G62670.1); Has 45111 Blast hits to 44660 proteins in 2702 species: Archae - 154; Bacteria - 38880; Metazoa - 15; Fungi - 96; Plants - 2828; Viruses - 0; Other Eukaryotes - 3138 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18191267..18193782
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198250.1 → NP_001185179.1  response regulator 19 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185179.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZW3
      Conserved Domains (2) summary
      TIGR01557
      Location:420 → 474
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      cd00156
      Location:37 → 149
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...

    2. NM_001333372.1 → NP_001319180.1  response regulator 19 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I1N9, F4I1P0, Q9M9B9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M9B9.2

    Gene LinkOut

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