U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    COR47 cold-regulated 47 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838632, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    COR47
    Official Full Name
    cold-regulated 47
    Primary source
    TAIR:AT1G20440
    Locus tag
    AT1G20440
    See related
    Araport:AT1G20440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtCOR47; cold-regulated 47; F5M15.22; F5M15_22; RD17
    Summary
    Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See COR47 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (7084409..7086873, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Pro Neighboring gene uncharacterized protein Neighboring gene Dehydrin family protein Neighboring gene NADH-ubiquinone oxidoreductase chain Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. An Arabidopsis mutant with deregulated ABA gene expression: implications for negative regulator function. Foster R, et al. Plant J, 1999 Feb. PMID 10205894
    2. cDNA sequence analysis and expression of two cold-regulated genes of Arabidopsis thaliana. Gilmour SJ, et al. Plant Mol Biol, 1992 Jan. PMID 1731964
    3. HOS1, a genetic locus involved in cold-responsive gene expression in arabidopsis. Ishitani M, et al. Plant Cell, 1998 Jul. PMID 9668134, Free PMC Article
    4. Evidence for in vivo interactions between dehydrins and the aquaporin AtPIP2B. Hernández-Sánchez IE, et al. Biochem Biophys Res Commun, 2019 Mar 19. PMID 30738581
    5. Overexpression of multiple dehydrin genes enhances tolerance to freezing stress in Arabidopsis. Puhakainen T, et al. Plant Mol Biol, 2004 Mar. PMID 15356392

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The COR47, ERD10, and RAB18 Arabidopsis dehydrins are able to interact with PIP2B in planta.
      Title: Evidence for in vivo interactions between dehydrins and the aquaporin AtPIP2B.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_101894.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cold acclimation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within cold acclimation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    acts_upstream_of_or_within defense response to fungus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within heat acclimation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to heat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to osmotic stress IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    cold-regulated 47
    NP_173468.1
    • cold-regulated 47 (COR47); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: Dehydrin family protein (TAIR:AT1G20450.1); Has 14264 Blast hits to 8754 proteins in 735 species: Archae - 48; Bacteria - 976; Metazoa - 4799; Fungi - 1094; Plants - 2502; Viruses - 117; Other Eukaryotes - 4728 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7084409..7086873 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101894.4 → NP_173468.1  cold-regulated 47 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173468.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P31168, Q39059
      UniProtKB/TrEMBL
      A0A178WKA9, A0A384KK16, Q0WL48
      Conserved Domains (1) summary
      pfam00257
      Location:136 → 198
      Dehydrin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P31168.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools