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    filament-like protein (DUF869) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838571, updated on 18-Sep-2024

    Summary

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    Official Full Name
    filament-like protein (DUF869)
    Primary source
    TAIR:AT1G19835
    Locus tag
    AT1G19835
    See related
    Araport:AT1G19835
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14P1.24; F14P1_24
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (6855899..6860563, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TCS1, a Microtubule-Binding Protein, Interacts with KCBP/ZWICHEL to Regulate Trichome Cell Shape in Arabidopsis thaliana. Chen L, et al. PLoS Genet, 2016 Oct. PMID 27768706, Free PMC Article
    2. Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors. Jaspers P, et al. Plant J, 2009 Oct. PMID 19548978
    3. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Findings reveal a novel genetic and molecular mechanism of TCS1 and KCBP in trichome cell shape control. [TCS1]
      Title: TCS1, a Microtubule-Binding Protein, Interacts with KCBP/ZWICHEL to Regulate Trichome Cell Shape in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001332410.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables microtubule binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within microtubule polymerization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within trichome morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with cortical microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    filament-like protein (DUF869)
    NP_001319045.1
    • Plant protein of unknown function (DUF869); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G47900.2).
    NP_173412.1
    • Plant protein of unknown function (DUF869); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G47900.2); Has 56433 Blast hits to 30629 proteins in 2025 species: Archae - 861; Bacteria - 7306; Metazoa - 28779; Fungi - 5162; Plants - 3416; Viruses - 109; Other Eukaryotes - 10800 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6855899..6860563 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101838.3 → NP_173412.1  filament-like protein (DUF869) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173412.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WSY2, Q56WC1, Q9FXI1
      UniProtKB/TrEMBL
      A0A178W340, A0A654EBC2
      Conserved Domains (1) summary
      pfam05911
      Location:82 → 898
      FPP; Filament-like plant protein, long coiled-coil

    2. NM_001332411.1 → NP_001321085.1  filament-like protein (DUF869) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WSY2, Q56WC1, Q9FXI1
      UniProtKB/TrEMBL
      A0A178W340, A0A654EBC2
      Conserved Domains (1) summary
      pfam05911
      Location:82 → 898
      FPP; Filament-like plant protein, long coiled-coil

    3. NM_001198113.1 → NP_001185042.1  filament-like protein (DUF869) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185042.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WSY2, Q56WC1, Q9FXI1
      UniProtKB/TrEMBL
      A0A178W340, A0A654EBC2
      Conserved Domains (1) summary
      pfam05911
      Location:82 → 898
      FPP; Filament-like plant protein, long coiled-coil

    4. NM_001332412.1 → NP_001321083.1  filament-like protein (DUF869) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WSY2, Q56WC1, Q9FXI1
      UniProtKB/TrEMBL
      A0A178W340, A0A654EBC2
      Conserved Domains (1) summary
      pfam05911
      Location:82 → 898
      FPP; Filament-like plant protein, long coiled-coil

    5. NM_001332413.1 → NP_001321084.1  filament-like protein (DUF869) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WSY2, Q56WC1, Q9FXI1
      UniProtKB/TrEMBL
      A0A178W340, A0A654EBC2
      Conserved Domains (1) summary
      pfam05911
      Location:82 → 898
      FPP; Filament-like plant protein, long coiled-coil

    6. NM_001332410.1 → NP_001319045.1  filament-like protein (DUF869) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WSY2, Q56WC1, Q9FXI1
      UniProtKB/TrEMBL
      A0A178W340, A0A654EBC2
      Conserved Domains (1) summary
      pfam05911
      Location:82 → 898
      FPP; Filament-like plant protein, long coiled-coil
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WSY2.1

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