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    RNA-binding S4 domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841746, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding S4 domain-containing protein
    Primary source
    TAIR:AT1G53120
    Locus tag
    AT1G53120
    See related
    Araport:AT1G53120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8L10.3; F8L10_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (19792751..19794778)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene ncRNA Neighboring gene proton pump-interactor Neighboring gene Stigma-specific Stig1 family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Dynamin related protein 5A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001333579.1
    NM_104191.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding S4 domain-containing protein
    NP_564622.1
    • RNA-binding S4 domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding S4 (InterPro:IPR002942), Photosystem II S4 domain protein (InterPro:IPR017506); Has 1630 Blast hits to 1630 proteins in 768 species: Archae - 0; Bacteria - 1422; Metazoa - 2; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19792751..19794778
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104191.5 → NP_564622.1  RNA-binding S4 domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564622.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMQ3, Q93YQ0
      Conserved Domains (1) summary
      PLN00051
      Location:54 → 320
      PLN00051; RNA-binding S4 domain-containing protein; Provisional

    2. NM_001333579.1 → NP_001322401.1  RNA-binding S4 domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ATW8
    Nucleotide Protein
    Heading Accession and Version

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