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    SOFL1 SOB five-like 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839162, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SOFL1
    Official Full Name
    SOB five-like 1
    Primary source
    TAIR:AT1G26210
    Locus tag
    AT1G26210
    See related
    Araport:AT1G26210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSOFL1; F28B23.12; F28B23_12; SOB five-like 1; SOB FIVE-LIKE 1
    Summary
    AtSOFL1 acts redundantly with AtSOFL2 as positive regulator of cytokinin levels.
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    Genomic context

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    See SOFL1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (9067039..9068207)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Phosphoribulokinase / Uridine kinase family Neighboring gene TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtSOFL1 and AtSOFL2 act redundantly as positive modulators of the endogenous content of specific cytokinins in Arabidopsis. Zhang J, et al. PLoS One, 2009 Dec 9. PMID 20011053, Free PMC Article
    2. Synopsis of the SOFL Plant-Specific Gene Family. Tayengwa R, et al. G3 (Bethesda), 2018 Mar 28. PMID 29467189, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtSOFL1 and AtSOFL2, in Arabidopsis acted redundantly in regulating specific cytokinin levels. [AtSOFL1]
      Title: AtSOFL1 and AtSOFL2 act redundantly as positive modulators of the endogenous content of specific cytokinins in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_102385.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cytokinin metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in cytokinin-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within developmental process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    NOT located_in plant-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SOB five-like 1
    NP_564241.1
    • SOB five-like 1 (SOFL1); BEST Arabidopsis thaliana protein match is: SOB five-like 2 (TAIR:AT1G68870.1); Has 495 Blast hits to 457 proteins in 104 species: Archae - 0; Bacteria - 20; Metazoa - 127; Fungi - 76; Plants - 112; Viruses - 7; Other Eukaryotes - 153 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9067039..9068207
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102385.2 → NP_564241.1  SOB five-like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564241.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67YG7, Q681A7, Q8LAZ9, Q9C665
      UniProtKB/TrEMBL
      A0A5S9VZ29
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q67YG7.1

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