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    GH3.4 Auxin-responsive GH3 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842240, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GH3.4
    Official Full Name
    Auxin-responsive GH3 family protein
    Primary source
    TAIR:AT1G59500
    Locus tag
    AT1G59500
    See related
    Araport:AT1G59500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30E16.2; T30E16_2
    Summary
    encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.
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    Genomic context

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    See GH3.4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (21854493..21856614, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene B-block-binding subunit of TFIIIC protein Neighboring gene B-block-binding subunit of TFIIIC protein Neighboring gene B-block-binding subunit of TFIIIC protein Neighboring gene ncRNA Neighboring gene Carbohydrate-binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid. Staswick PE, et al. Plant Cell, 2005 Feb. PMID 15659623, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables indole-3-acetic acid amido synthetase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within intracellular auxin homeostasis TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Auxin-responsive GH3 family protein
    NP_176159.1
    • GH3.4; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G37390.1); Has 1635 Blast hits to 1520 proteins in 238 species: Archae - 0; Bacteria - 543; Metazoa - 54; Fungi - 2; Plants - 674; Viruses - 0; Other Eukaryotes - 362 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21854493..21856614 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104643.1 → NP_176159.1  Auxin-responsive GH3 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176159.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LQ68
      UniProtKB/TrEMBL
      A0A5S9WQL5
      Conserved Domains (2) summary
      PLN02249
      Location:1 → 597
      PLN02249; indole-3-acetic acid-amido synthetase
      pfam03321
      Location:26 → 566
      GH3; GH3 auxin-responsive promoter
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LQ68.1

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