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    coiled-coil protein (DUF572) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839146, updated on 18-Sep-2024

    Summary

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    Official Full Name
    coiled-coil protein (DUF572)
    Primary source
    TAIR:AT1G25682
    Locus tag
    AT1G25682
    See related
    Araport:AT1G25682
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14G11.11; F14G11_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (9002285..9004762, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Di-glucose binding protein with Leucine-rich repeat domain-containing protein Neighboring gene NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_102370.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil protein (DUF572)
    NP_173930.1
    • Family of unknown function (DUF572); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT1G25988.1); Has 717 Blast hits to 715 proteins in 213 species: Archae - 0; Bacteria - 6; Metazoa - 235; Fungi - 232; Plants - 115; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9002285..9004762 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332684.1 → NP_001322477.1  coiled-coil protein (DUF572) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W244, A0A5S9VZT3, Q9C609
      Conserved Domains (1) summary
      pfam04502
      Location:13 → 307
      DUF572; Family of unknown function (DUF572)

    2. NM_102370.4 → NP_173930.1  coiled-coil protein (DUF572) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173930.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W244, A0A5S9VZT3, Q9C609
      Conserved Domains (1) summary
      pfam04502
      Location:13 → 307
      DUF572; Family of unknown function (DUF572)
    Nucleotide Protein
    Heading Accession and Version

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