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    SEC1A secretory 1A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839288, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SEC1A
    Official Full Name
    secretory 1A
    Primary source
    TAIR:AT1G02010
    Locus tag
    AT1G02010
    See related
    Araport:AT1G02010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    secretory 1A
    Summary
    member of KEULE Gene Family
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    Genomic context

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    See SEC1A in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    21
    Sequence:
    Chromosome: 1; NC_003070.9 (347613..352545)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene UDP-D-glucuronate 4-epimerase 2 Neighboring gene nitroreductase family protein Neighboring gene C2H2-like zinc finger protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SEC1A and SEC6 synergistically regulate pollen tube polar growth. Fan T, et al. J Integr Plant Biol, 2023 Jul. PMID 36951316
    2. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SEC1A and SEC6 synergistically regulate pollen tube polar growth.
      Title: SEC1A and SEC6 synergistically regulate pollen tube polar growth.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001197959.1
    NM_001331318.1
    NM_001331319.1
    NM_001331320.1
    NM_001331321.1
    NM_100081.5

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    secretory 1A
    NP_001184888.1
    • secretory 1A (SEC1A); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1).
    NP_563643.4
    • secretory 1A (SEC1A); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1); Has 1717 Blast hits to 1698 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 705; Fungi - 477; Plants - 219; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      347613..352545
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100081.5 → NP_563643.4  secretory 1A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563643.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23672, Q9C5P7, Q9LPC0
      UniProtKB/TrEMBL
      A0A178WGV3, A0A5S9S4A9
      Conserved Domains (1) summary
      pfam00995
      Location:46 → 645
      Sec1; Sec1 family

    2. NM_001331318.1 → NP_001320381.1  secretory 1A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9S4A9, A0A654EB07
      Conserved Domains (1) summary
      pfam00995
      Location:46 → 559
      Sec1; Sec1 family

    3. NM_001331320.1 → NP_001320382.1  secretory 1A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMM1, A0A7G2DR81
      Conserved Domains (1) summary
      pfam00995
      Location:14 → 613
      Sec1; Sec1 family

    4. NM_001331319.1 → NP_001320383.1  secretory 1A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMM7, A0A5S9S4A9

    5. NM_001197959.1 → NP_001184888.1  secretory 1A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184888.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9S4A9, F4HVU5
      Conserved Domains (1) summary
      pfam00995
      Location:46 → 434
      Sec1; Sec1 family

    6. NM_001331321.1 → NP_001320384.1  secretory 1A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMM4, A0A7G2DR81
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C5P7.3

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