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    GPI-anchored adhesin-like protein, putative (DUF936) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837398, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GPI-anchored adhesin-like protein, putative (DUF936)
    Primary source
    TAIR:AT1G08760
    Locus tag
    AT1G08760
    See related
    Araport:AT1G08760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22O13.25; F22O13_25
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (2805044..2808623)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Peptidase C13 family Neighboring gene prenylated RAB acceptor 1.E Neighboring gene ABI3-interacting protein 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CORTICAL MICROTUBULE DISORDERING1 Is Required for Secondary Cell Wall Patterning in Xylem Vessels. Sasaki T, et al. Plant Cell, 2017 Dec. PMID 29133465, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CORD1 promotes cortical microtubule disorganization to regulate secondary cell wall pit formation.[CORD1]
      Title: CORTICAL MICROTUBULE DISORDERING1 Is Required for Secondary Cell Wall Patterning in Xylem Vessels.
    Submit: New GeneRIF Correction

    General gene information

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    NM_100750.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables microtubule binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within xylem vessel member cell differentiation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GPI-anchored adhesin-like protein, putative (DUF936)
    NP_172353.1
    • Plant protein of unknown function (DUF936); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF936) (TAIR:AT3G14170.1); Has 718 Blast hits to 418 proteins in 99 species: Archae - 0; Bacteria - 149; Metazoa - 50; Fungi - 25; Plants - 280; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2805044..2808623
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100750.3 → NP_172353.1  GPI-anchored adhesin-like protein, putative (DUF936) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172353.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFF3, A0A5S9TCA9, Q9FRR2
      Conserved Domains (1) summary
      pfam06075
      Location:4 → 721
      DUF936; Plant protein of unknown function (DUF936)
    Nucleotide Protein
    Heading Accession and Version

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