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    RINT-1 / TIP-1 family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837360, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RINT-1 / TIP-1 family
    Primary source
    TAIR:AT1G08400
    Locus tag
    AT1G08400
    See related
    Araport:AT1G08400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27G7.8; T27G7_8
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (2643019..2646048, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene decapping 1 Neighboring gene recQ-mediated instability-like protein Neighboring gene photosystem I subunit O Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene BRI1 suppressor 1 (BSU1)-like 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MAIGO2 is involved in abscisic acid-mediated response to abiotic stresses and Golgi-to-ER retrograde transport. Zhao P, et al. Physiol Plant, 2013 Jun. PMID 23025793
    2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_100713.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in COPI-coated Golgi to ER transport vesicle TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in COPII-coated ER to Golgi transport vesicle TAS
    Traceable Author Statement
    more info
    		 PubMed 
    part_of Dsl1/NZR complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RINT-1 / TIP-1 family
    NP_172316.2
    • RINT-1 / TIP-1 family; CONTAINS InterPro DOMAIN/s: RINT-1/TIP-1 (InterPro:IPR007528); BEST Arabidopsis thaliana protein match is: RINT-1 / TIP-1 family (TAIR:AT3G47700.1); Has 146 Blast hits to 144 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 64; Fungi - 34; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2643019..2646048 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100713.3 → NP_172316.2  RINT-1 / TIP-1 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172316.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GXP1, Q9SJF2
      UniProtKB/TrEMBL
      A0A178W9P1, A0A654EIM8, A0A7G2DTV0
      Conserved Domains (1) summary
      pfam04437
      Location:293 → 794
      RINT1_TIP1; RINT-1 / TIP-1 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GXP1.1

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