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    T-box transcription factor, putative (DUF863) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837954, updated on 18-Sep-2024

    Summary

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    Official Full Name
    T-box transcription factor, putative (DUF863)
    Primary source
    TAIR:AT1G13940
    Locus tag
    AT1G13940
    See related
    Araport:AT1G13940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16A14.15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (4762479..4766852, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene Remorin family protein Neighboring gene oleosin-B3-like protein Neighboring gene ncRNA Neighboring gene eukaryotic elongation factor 5A-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101260.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    T-box transcription factor, putative (DUF863)
    NP_172847.1
    • Plant protein of unknown function (DUF863); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 222 Blast hits to 202 proteins in 28 species: Archae - 0; Bacteria - 4; Metazoa - 12; Fungi - 2; Plants - 194; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4762479..4766852 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332104.1 → NP_001321537.1  T-box transcription factor, putative (DUF863) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EBN7, Q9LMG4

    2. NM_101260.3 → NP_172847.1  T-box transcription factor, putative (DUF863) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172847.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EBN7, Q9LMG4
      Conserved Domains (1) summary
      pfam05904
      Location:138 → 984
      DUF863; Plant protein of unknown function (DUF863)
    Nucleotide Protein
    Heading Accession and Version

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