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    AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837341, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AXS2
    Official Full Name
    UDP-D-apiose/UDP-D-xylose synthase 2
    Primary source
    TAIR:AT1G08200
    Locus tag
    AT1G08200
    See related
    Araport:AT1G08200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23G18.6; T23G18_6; UDP-D-apiose/UDP-D-xylose synthase 2
    Summary
    Encodes a putative UDP-D-apiose/UPD-D-xylose synthetase.
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    Genomic context

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    See AXS2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (2573818..2576844, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase inhibitor Neighboring gene vacuolar protein sorting 41 Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene ATPase complex subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The biosynthesis of the branched-chain sugar d-apiose in plants: functional cloning and characterization of a UDP-d-apiose/UDP-d-xylose synthase from Arabidopsis. Mølhøj M, et al. Plant J, 2003 Sep. PMID 12969423
    2. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Bindschedler LV, et al. Phytochemistry, 2008 Jul. PMID 18538804
    3. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
    4. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_100694.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables UDP-glucuronate decarboxylase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables carboxy-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within nucleotide-sugar biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in apoplast HDA PubMed 
    located_in cytoplasm NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in extracellular region HDA PubMed 

    General protein information

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    Preferred Names
    UDP-D-apiose/UDP-D-xylose synthase 2
    NP_563807.1
    • UDP-D-apiose/UDP-D-xylose synthase 2 (AXS2); FUNCTIONS IN: UDP-glucuronate decarboxylase activity; INVOLVED IN: nucleotide-sugar biosynthetic process; LOCATED IN: apoplast, cytoplasm; EXPRESSED IN: fruit, guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-D-apiose/UDP-D-xylose synthase 1 (TAIR:AT2G27860.1); Has 18414 Blast hits to 18403 proteins in 2616 species: Archae - 518; Bacteria - 11662; Metazoa - 253; Fungi - 80; Plants - 1043; Viruses - 12; Other Eukaryotes - 4846 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2573818..2576844 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100694.5 → NP_563807.1  UDP-D-apiose/UDP-D-xylose synthase 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563807.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9F5, Q94B32, Q9SGE0
      UniProtKB/TrEMBL
      A0A178VYU0, A0A178WCP0, A0A5S9TAD9, A0A5S9X1U0
      Conserved Domains (1) summary
      PLN02427
      Location:4 → 389
      PLN02427; UDP-apiose/xylose synthase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SGE0.1

    Gene LinkOut

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