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    RNA-processing, Lsm domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843358, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-processing, Lsm domain-containing protein
    Primary source
    TAIR:AT1G70220
    Locus tag
    AT1G70220
    See related
    Araport:AT1G70220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20P5.6; F20P5_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (26446084..26448058, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene CYCLIN D1;1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene TRICHOME BIREFRINGENCE-LIKE 27 Neighboring gene receptor serine/threonine kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_105690.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-processing, Lsm domain-containing protein
    NP_177179.2
    • RNA-processing, Lsm domain; CONTAINS InterPro DOMAIN/s: RNA-processing, Lsm domain (InterPro:IPR019181); BEST Arabidopsis thaliana protein match is: RNA-processing, Lsm domain (TAIR:AT1G24050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26446084..26448058 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334441.1 → NP_001323394.1  RNA-processing, Lsm domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN20, A0A1P8AWW8

    2. NM_105690.3 → NP_177179.2  RNA-processing, Lsm domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177179.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN20, F4I5D2
      Conserved Domains (1) summary
      pfam09793
      Location:133 → 211
      AD; Anticodon-binding domain
    Nucleotide Protein
    Heading Accession and Version

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