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    Sterile alpha motif (SAM) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843354, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Sterile alpha motif (SAM) domain-containing protein
    Primary source
    TAIR:AT1G70180
    Locus tag
    AT1G70180
    See related
    Araport:AT1G70180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20P5.10; F20P5_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (26426269..26429409)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene matrix metalloproteinase Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ribosomal protein L7/L12 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001334437.1
    NM_001334438.1
    NM_001334439.1
    NM_001334440.1
    NM_105686.6
    NM_180642.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Sterile alpha motif (SAM) domain-containing protein
    NP_177175.2
    • Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif-type (InterPro:IPR013761), Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 1 (InterPro:IPR021129); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT3G07170.1); Has 6486 Blast hits to 4294 proteins in 377 species: Archae - 0; Bacteria - 358; Metazoa - 2617; Fungi - 961; Plants - 670; Viruses - 147; Other Eukaryotes - 1733 (source: NCBI BLink).
    NP_850973.1
    • Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 1 (InterPro:IPR021129); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT3G07170.1); Has 6230 Blast hits to 4024 proteins in 371 species: Archae - 0; Bacteria - 343; Metazoa - 2415; Fungi - 962; Plants - 639; Viruses - 147; Other Eukaryotes - 1724 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26426269..26429409
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180642.2 → NP_850973.1  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850973.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ESV2, F4I5C6
      Conserved Domains (2) summary
      smart00454
      Location:402 → 440
      SAM; Sterile alpha motif
      pfam00536
      Location:402 → 440
      SAM_1; SAM domain (Sterile alpha motif)

    2. NM_001334437.1 → NP_001320860.1  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AP47, A0A654ESV2

    3. NM_105686.6 → NP_177175.2  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177175.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WTF6, A0A654ESV2, Q8VZ94
      Conserved Domains (2) summary
      PHA03307
      Location:164 → 325
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam00536
      Location:402 → 457
      SAM_1; SAM domain (Sterile alpha motif)

    4. NM_001334438.1 → NP_001320862.1  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ESV2, F4I5C6

    5. NM_001334439.1 → NP_001320859.1  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WLJ7, A0A1P8APA4

    6. NM_001334440.1 → NP_001320861.1  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WNC0, A0A1P8AP63
    Nucleotide Protein
    Heading Accession and Version

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