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    transmembrane protein, putative (DUF1163) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843341, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF1163)
    Primary source
    TAIR:AT1G70040
    Locus tag
    AT1G70040
    See related
    Araport:AT1G70040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20P5.22; F20P5_22
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (26381233..26382131)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF1163) Neighboring gene Paired amphipathic helix (PAH2) superfamily protein Neighboring gene tRNA-Pro Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_105673.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF1163)
    NP_177162.1
    • Protein of unknown function (DUF1163); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1163 (InterPro:IPR009544); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1163) (TAIR:AT1G70120.1); Has 41 Blast hits to 41 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26381233..26382131
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105673.2 → NP_177162.1  transmembrane protein, putative (DUF1163) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177162.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WTP6, A0MEF5, O04540
      Conserved Domains (1) summary
      pfam06651
      Location:126 → 192
      DUF1163; Protein of unknown function (DUF1163)
    Nucleotide Protein
    Heading Accession and Version

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