Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Paired amphipathic helix (PAH2) superfamily protein
Primary source: TAIR:AT1G70030
Locus tag: AT1G70030
See related: Araport:AT1G70030
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F20P5.23; F20P5_23
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 5

Sequence:: Chromosome: 1; NC_003070.9 (26378641..26380379)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001334431.1

Supported by ESTs:

NM_001334432.1

Supported by ESTs:

NM_105672.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables transcription corepressor activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Paired amphipathic helix (PAH2) superfamily protein

NP_177161.2

Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 4 (TAIR:AT1G70060.1); Has 1404 Blast hits to 650 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 539; Fungi - 520; Plants - 290; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

26378641..26380379

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_105672.3 → NP_177161.2 Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_177161.2

Status: REVIEWED

UniProtKB/TrEMBL

A0A654EMP4, O04541, Q84R24

Conserved Domains (1) summary

COG5602
Location:3 → 157

Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
NM_001334431.1 → NP_001321202.1 Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AQ30, A0A654EMP4, O04541
NM_001334432.1 → NP_001321201.1 Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AQ85