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    proline-rich family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837837, updated on 18-Sep-2024

    Summary

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    Official Full Name
    proline-rich family protein
    Primary source
    TAIR:AT1G12810
    Locus tag
    AT1G12810
    See related
    Araport:AT1G12810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13K23.6; F13K23_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (4367256..4368822)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene nucleotide binding protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene auxin signaling F-box 3 Neighboring gene nucleolin Neighboring gene vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001160859.1
    NM_101151.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    proline-rich family protein
    NP_001154331.1
    • proline-rich family protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 236 Blast hits to 228 proteins in 57 species: Archae - 0; Bacteria - 8; Metazoa - 108; Fungi - 38; Plants - 63; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
    NP_563914.1
    • proline-rich family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33520.1); Has 20080 Blast hits to 10426 proteins in 614 species: Archae - 4; Bacteria - 1877; Metazoa - 7835; Fungi - 2952; Plants - 4732; Viruses - 459; Other Eukaryotes - 2221 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4367256..4368822
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101151.2 → NP_563914.1  proline-rich family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563914.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJH3, Q940Z6

    2. NM_001160859.1 → NP_001154331.1  proline-rich family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154331.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IDX2
    Nucleotide Protein
    Heading Accession and Version

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