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    IQD6 IQ-domain 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817158, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IQD6
    Official Full Name
    IQ-domain 6
    Primary source
    TAIR:AT2G26180
    Locus tag
    AT2G26180
    See related
    Araport:AT2G26180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    IQ-domain 6; T1D16.18; T1D16_18
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    Genomic context

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    See IQD6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (11143290..11145103, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene heat shock transcription factor A2 Neighboring gene F-box SKIP23-like protein (DUF295) Neighboring gene cytochrome P450, family 711, subfamily A, polypeptide 1 Neighboring gene calmodulin-binding family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. IQ67 DOMAIN proteins facilitate preprophase band formation and division-plane orientation. Kumari P, et al. Nat Plants, 2021 Jun. PMID 34031540
    2. The IQD Family of Calmodulin-Binding Proteins Links Calcium Signaling to Microtubules, Membrane Subdomains, and the Nucleus. Bürstenbinder K, et al. Plant Physiol, 2017 Mar. PMID 28115582, Free PMC Article
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_128176.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cytokinesis, division site positioning IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    colocalizes_with nuclear speck IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in phragmoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in preprophase band IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    IQ-domain 6
    NP_180187.1
    • IQ-domain 6 (IQD6); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 8 (TAIR:AT1G72670.1); Has 885 Blast hits to 872 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 10; Plants - 828; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11143290..11145103 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128176.3 → NP_180187.1  IQ-domain 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180187.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64852
      UniProtKB/TrEMBL
      A0A178VX58, A0A654EWA0, A0A7G2EF24
      Conserved Domains (1) summary
      smart00015
      Location:86 → 104
      IQ; Calmodulin-binding motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64852.1

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