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    transcription factor-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819303, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcription factor-like protein
    Primary source
    TAIR:AT2G46900
    Locus tag
    AT2G46900
    See related
    Araport:AT2G46900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14M4.27
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (19269558..19272263)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene purple acid phosphatase 14 Neighboring gene 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) Neighboring gene Plastid-lipid associated protein PAP / fibrillin family protein Neighboring gene DUF3754 family protein, putative (DUF3754) Neighboring gene Protein phosphatase 2C family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_130257.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcription factor-like protein
    NP_566090.1
    • CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19269558..19272263
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130257.5 → NP_566090.1  transcription factor-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566090.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VSX5, A0A654F3Y1, O80734
      Conserved Domains (1) summary
      pfam04910
      Location:226 → 553
      Tcf25; Transcriptional repressor TCF25
    Nucleotide Protein
    Heading Accession and Version

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