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    Ikzf5 (DUF668) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840333, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ikzf5 (DUF668)
    Primary source
    TAIR:AT1G34320
    Locus tag
    AT1G34320
    See related
    Araport:AT1G34320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23M19.3; F23M19_3; PSI1; PSK SIMULATOR 1
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (12520059..12524377)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene alpha/beta-Hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The PSI family of nuclear proteins is required for growth in arabidopsis. Stührwohldt N, et al. Plant Mol Biol, 2014 Oct. PMID 25062973
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PSI1 protein has a role in Arabidopsis growth.
      Title: The PSI family of nuclear proteins is required for growth in arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001333096.1
    NM_103154.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ikzf5 (DUF668)
    NP_174692.1
    • Protein of unknown function (DUF668); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT5G08660.1); Has 339 Blast hits to 273 proteins in 21 species: Archae - 0; Bacteria - 1; Metazoa - 3; Fungi - 0; Plants - 335; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12520059..12524377
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103154.4 → NP_174692.1  Ikzf5 (DUF668) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174692.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NQ48, Q9XID5
      UniProtKB/TrEMBL
      A0A178WAD1, A0A654EGV6
      Conserved Domains (2) summary
      pfam05003
      Location:380 → 463
      DUF668; Protein of unknown function (DUF668)
      pfam11961
      Location:157 → 213
      DUF3475; Domain of unknown function (DUF3475)

    2. NM_001333096.1 → NP_001322690.1  Ikzf5 (DUF668) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NQ48, Q9XID5
      UniProtKB/TrEMBL
      A0A178WAD1, A0A654EGV6
      Conserved Domains (2) summary
      pfam05003
      Location:380 → 463
      DUF668; Protein of unknown function (DUF668)
      pfam11961
      Location:157 → 213
      DUF3475; Domain of unknown function (DUF3475)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XID5.2

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