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    transmembrane protein (DUF677) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838607, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein (DUF677)
    Primary source
    TAIR:AT1G20180
    Locus tag
    AT1G20180
    See related
    Araport:AT1G20180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20H2.5; T20H2_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (6996176..6997943)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Subtilisin-like serine endopeptidase family protein Neighboring gene tRNA-Glu Neighboring gene expansin 11 Neighboring gene PAM domain (PCI/PINT associated module) protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084098.1
    NM_101871.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein (DUF677)
    NP_001077567.1
    • Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G49070.1); Has 138 Blast hits to 138 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_173445.2
    • Protein of unknown function (DUF677); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G49070.1); Has 186 Blast hits to 186 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 186; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6996176..6997943
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101871.3 → NP_173445.2  transmembrane protein (DUF677) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173445.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5BQ01, Q6DYE5, Q9LNU2
      UniProtKB/TrEMBL
      A0A178W669, A0A5S9VAV4
      Conserved Domains (1) summary
      cl21731
      Location:87 → 385
      DUF677; Protein of unknown function (DUF677)

    2. NM_001084098.1 → NP_001077567.1  transmembrane protein (DUF677) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077567.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6DYE5
      Conserved Domains (1) summary
      cl21731
      Location:87 → 354
      DUF677; Protein of unknown function (DUF677)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6DYE5.2

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