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    La2 RNA recognition motif (RRM)-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844327, updated on 18-Sep-2024

    Summary

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    Official Symbol
    La2
    Official Full Name
    RNA recognition motif (RRM)-containing protein
    Primary source
    TAIR:AT1G79880
    Locus tag
    AT1G79880
    See related
    Araport:AT1G79880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtLa2; F19K16.16; F19K16_16; La protein 2
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    Genomic context

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    See La2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (30046028..30048408, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein Neighboring gene ncRNA Neighboring gene RHO guanyl-nucleotide exchange factor 12 Neighboring gene ribosomal protein S17 Neighboring gene D-isomer specific 2-hydroxyacid dehydrogenase family protein Neighboring gene RAD3-like DNA-binding helicase protein Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene Regulator of Vps4 activity in the MVB pathway protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001334930.1
    NM_106637.5
    NM_202456.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in tRNA 3'-end processing ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleolus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA recognition motif (RRM)-containing protein
    NP_001319421.1
    • RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif (InterPro:IPR014886); BEST Arabidopsis thaliana protein match is: La protein 1 (TAIR:AT4G32720.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_178106.2
    • RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif (InterPro:IPR014886); BEST Arabidopsis thaliana protein match is: La protein 1 (TAIR:AT4G32720.2); Has 814 Blast hits to 814 proteins in 193 species: Archae - 0; Bacteria - 2; Metazoa - 413; Fungi - 147; Plants - 181; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
    NP_974185.1
    • RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif (InterPro:IPR014886); BEST Arabidopsis thaliana protein match is: La protein 1 (TAIR:AT4G32720.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30046028..30048408 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106637.5 → NP_178106.2  RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178106.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z3H3, F4HQC8, Q0V7U7, Q0WRW1, Q9CA91
      UniProtKB/TrEMBL
      A0A178W9W6, A0A5S9WVZ5, A0A654EQI3
      Conserved Domains (3) summary
      cd08030
      Location:9 → 98
      LA_like_plant; La-motif domain of plant proteins similar to the La autoantigen
      cd12292
      Location:288 → 350
      RRM2_La_like; RNA recognition motif 2 in La autoantigen (La or SS-B or LARP3), La-related protein 7 (LARP7 or PIP7S) and similar proteins
      cl17169
      Location:116 → 187
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. NM_001334930.1 → NP_001319421.1  RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9W9

    3. NM_202456.2 → NP_974185.1  RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974185.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9W9
      Conserved Domains (3) summary
      cd12292
      Location:234 → 296
      RRM2_La_like; RNA recognition motif 2 in La autoantigen (La or SS-B or LARP3), La-related protein 7 (LARP7 or PIP7S) and similar proteins
      cl02755
      Location:1 → 44
      LAM; LA motif RNA-binding domain
      cl17169
      Location:62 → 133
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0V7U7.1

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