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    BTI1 VIRB2-interacting protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828463, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BTI1
    Official Full Name
    VIRB2-interacting protein 1
    Primary source
    TAIR:AT4G23630
    Locus tag
    AT4G23630
    See related
    Araport:AT4G23630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9D16.100; F9D16_100; Reticulan like protein B1; RTNLB1; VIRB2-interacting protein 1
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    Genomic context

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    See BTI1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (12317036..12320074)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene ncRNA Neighboring gene Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein Neighboring gene tRNA-Leu Neighboring gene Potassium transporter family protein Neighboring gene calcium-dependent protein kinase 6 Neighboring gene polyprenyltransferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis RETICULON-LIKE3 (RTNLB3) and RTNLB8 Participate in Agrobacterium-Mediated Plant Transformation. Huang FC, et al. Int J Mol Sci, 2018 Feb 24. PMID 29495267, Free PMC Article
    2. Arabidopsis RTNLB1 and RTNLB2 Reticulon-like proteins regulate intracellular trafficking and activity of the FLS2 immune receptor. Lee HY, et al. Plant Cell, 2011 Sep. PMID 21949153, Free PMC Article
    3. Five Arabidopsis reticulon isoforms share endoplasmic reticulum location, topology, and membrane-shaping properties. Sparkes I, et al. Plant Cell, 2010 Apr. PMID 20424177, Free PMC Article
    4. Plant proteins that interact with VirB2, the Agrobacterium tumefaciens pilin protein, mediate plant transformation. Hwang HH, et al. Plant Cell, 2004 Nov. PMID 15494553, Free PMC Article
    5. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2004 Jul. PMID 15060130

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RTNLB1 and RTNLB2 modulate FLS2 immune activity through a mechanism that involves the control of the anterograde transport of FLS2.
      Title: Arabidopsis RTNLB1 and RTNLB2 Reticulon-like proteins regulate intracellular trafficking and activity of the FLS2 immune receptor.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001341623.1
    NM_118494.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum tubular network organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic side of endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    located_in endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum tubular network IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    VIRB2-interacting protein 1
    NP_194094.1
    • VIRB2-interacting protein 1 (BTI1); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 2 (TAIR:AT4G11220.1); Has 1242 Blast hits to 1240 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 705; Fungi - 11; Plants - 505; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12317036..12320074
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118494.5 → NP_194094.1  VIRB2-interacting protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194094.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SUR3
      UniProtKB/TrEMBL
      A0A178V247, A0A5S9XW12
      Conserved Domains (1) summary
      pfam02453
      Location:89 → 245
      Reticulon

    2. NM_001341623.1 → NP_001328059.1  VIRB2-interacting protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SUR3
      UniProtKB/TrEMBL
      A0A178V247, A0A5S9XW12
      Conserved Domains (1) summary
      pfam02453
      Location:89 → 245
      Reticulon
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SUR3.1

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