FER Malectin/receptor-like protein kinase family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: FER
Official Full Name: Malectin/receptor-like protein kinase family protein
Primary source: TAIR:AT3G51550
Locus tag: AT3G51550
See related: Araport:AT3G51550
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: FERONIA
Summary: Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception. Also involved in powdery mildew infection.
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Genomic context

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See FER in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 2

Sequence:: Chromosome: 3; NC_003074.8 (19117584..19120949, complement)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

FERONIA-mediated TIR1/AFB2 oxidation stimulates auxin signaling in Arabidopsis.
Title: FERONIA-mediated TIR1/AFB2 oxidation stimulates auxin signaling in Arabidopsis.
The soil emergence-related transcription factor PIF3 controls root penetration by interacting with the receptor kinase FER.
Title: The soil emergence-related transcription factor PIF3 controls root penetration by interacting with the receptor kinase FER.
Growth-inhibiting effects of the unconventional plant APYRASE 7 of Arabidopsis thaliana influences the LRX/RALF/FER growth regulatory module.
Title: Growth-inhibiting effects of the unconventional plant APYRASE 7 of Arabidopsis thaliana influences the LRX/RALF/FER growth regulatory module.
The FERONIA-YUELAO module participates in translational control by modulating the abundance of tRNA fragments in Arabidopsis.
Title: The FERONIA-YUELAO module participates in translational control by modulating the abundance of tRNA fragments in Arabidopsis.
Cell surface receptor kinase FERONIA linked to nutrient sensor TORC signaling controls root hair growth at low temperature linked to low nitrate in Arabidopsis thaliana.
Title: Cell surface receptor kinase FERONIA linked to nutrient sensor TORC signaling controls root hair growth at low temperature linked to low nitrate in Arabidopsis thaliana.
A receptor-channel trio conducts Ca(2+) signalling for pollen tube reception.
Title: A receptor-channel trio conducts Ca(2+) signalling for pollen tube reception.
Regulation of immune receptor kinase plasma membrane nanoscale organization by a plant peptide hormone and its receptors.
Title: Regulation of immune receptor kinase plasma membrane nanoscale organization by a plant peptide hormone and its receptors.
FERONIA and microtubules independently contribute to mechanical integrity in the Arabidopsis shoot.
Title: FERONIA and microtubules independently contribute to mechanical integrity in the Arabidopsis shoot.
The phyB-dependent induction of HY5 promotes iron uptake by systemically activating FER expression.
Title: The phyB-dependent induction of HY5 promotes iron uptake by systemically activating FER expression.
A temperature-sensitive FERONIA mutant allele that alters root hair growth.
Title: A temperature-sensitive FERONIA mutant allele that alters root hair growth.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_115014.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables kinase activity	ISS Inferred from Sequence or Structural Similarity more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein kinase activity	IDA Inferred from Direct Assay more info	PubMed
enables protein serine/threonine kinase activity	IEA Inferred from Electronic Annotation more info
enables transmembrane receptor protein tyrosine kinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within circadian regulation of gene expression	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within defense response to fungus	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in negative regulation of abscisic acid-activated signaling pathway	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in negative regulation of cell growth	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within pollen tube reception	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within post-embryonic development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within protein autophosphorylation	IDA Inferred from Direct Assay more info	PubMed
involved_in response to brassinosteroid	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in response to ethylene	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in root development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within stomatal movement	IGI Inferred from Genetic Interaction more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular region	ISM Inferred from Sequence Model more info
located_in filiform apparatus	IDA Inferred from Direct Assay more info	PubMed
located_in plasma membrane	HDA more info	PubMed
located_in plasma membrane	IDA Inferred from Direct Assay more info	PubMed
located_in plasmodesma	HDA more info	PubMed

General protein information

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Preferred Names: Malectin/receptor-like protein kinase family protein

NP_190723.1

FERONIA (FER); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: pollen tube reception, post-embryonic development, protein amino acid autophosphorylation; LOCATED IN: filiform apparatus, plasma membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Malectin/receptor-like protein kinase family protein (TAIR:AT3G04690.1); Has 113642 Blast hits to 112400 proteins in 4384 species: Archae - 101; Bacteria - 12955; Metazoa - 42231; Fungi - 9220; Plants - 32542; Viruses - 402; Other Eukaryotes - 16191 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

19117584..19120949 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_115014.5 → NP_190723.1 Malectin/receptor-like protein kinase family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_190723.1

Status: REVIEWED

UniProtKB/Swiss-Prot

A7U523, Q0WM33, Q94C93, Q9M4G2, Q9SCZ4

UniProtKB/TrEMBL

A0A178VHM4

Conserved Domains (3) summary

cd14066
Location:542 → 808

STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

pfam11721
Location:226 → 370

Malectin; Di-glucose binding within endoplasmic reticulum

pfam12819
Location:38 → 408

Malectin_like; Carbohydrate-binding protein of the ER