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    AGF2 AT-hook protein of GA feedback 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824721, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGF2
    Official Full Name
    AT-hook protein of GA feedback 2
    Primary source
    TAIR:AT3G55560
    Locus tag
    AT3G55560
    See related
    Araport:AT3G55560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AHL15; AT-hook motif nuclear-localized protein 15; AT-hook protein of GA feedback 2
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    Genomic context

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    See AGF2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (20604616..20606650, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene nuclear transport factor 2 (NTF2) family protein Neighboring gene Concanavalin A-like lectin protein kinase family protein Neighboring gene uncharacterized protein Neighboring gene cytoplasmic tRNA 2-thiolation protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A suppressor of axillary meristem maturation promotes longevity in flowering plants. Karami O, et al. Nat Plants, 2020 Apr. PMID 32284551
    2. Overexpression of AHL20 negatively regulates defenses in Arabidopsis. Lu H, et al. J Integr Plant Biol, 2010 Sep. PMID 20738724
    3. Endogenous auxin maintains embryonic cell identity and promotes somatic embryo development in Arabidopsis. Karami O, et al. Plant J, 2023 Jan. PMID 36345646, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A suppressor of axillary meristem maturation promotes longevity in flowering plants.
      Title: A suppressor of axillary meristem maturation promotes longevity in flowering plants.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_115413.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables minor groove of adenine-thymine-rich DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative regulation of innate immune response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within somatic embryogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AT-hook protein of GA feedback 2
    NP_191115.1
    • AT-hook protein of GA feedback 2 (AGF2); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 20 (TAIR:AT4G14465.1); Has 804 Blast hits to 798 proteins in 45 species: Archae - 0; Bacteria - 14; Metazoa - 18; Fungi - 6; Plants - 758; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20604616..20606650 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115413.4 → NP_191115.1  AT-hook protein of GA feedback 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191115.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M2S3
      UniProtKB/TrEMBL
      A0A178VH84, A0A5S9XMT2
      Conserved Domains (1) summary
      cd11378
      Location:118 → 191
      DUF296; Domain of unknown function found in archaea, bacteria, and plants
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M2S3.1

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