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    proline-rich extensin-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830551, updated on 18-Sep-2024

    Summary

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    Official Full Name
    proline-rich extensin-like family protein
    Primary source
    TAIR:AT5G06630
    Locus tag
    AT5G06630
    See related
    Araport:AT5G06630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15M7.16; F15M7_16
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (2036312..2037855, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene lipase (DUF620) Neighboring gene SET domain protein 38 Neighboring gene miscRNA Neighboring gene Proline-rich extensin-like family protein Neighboring gene gibberellin-regulated-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_120746.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of cell wall IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in plant-type cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    proline-rich extensin-like family protein
    NP_196281.2
    • proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, hypocotyl, male gametophyte, root, leaf; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT2G24980.1); Has 160752 Blast hits to 32037 proteins in 1417 species: Archae - 314; Bacteria - 21521; Metazoa - 60648; Fungi - 26708; Plants - 25391; Viruses - 3854; Other Eukaryotes - 22316 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2036312..2037855 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120746.3 → NP_196281.2  proline-rich extensin-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196281.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K3X4
    Nucleotide Protein
    Heading Accession and Version

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