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    Plasma-membrane choline transporter family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831221, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plasma-membrane choline transporter family protein
    Primary source
    TAIR:AT5G13760
    Locus tag
    AT5G13760
    See related
    Araport:AT5G13760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MXE10.1; MXE10_1
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (4441858..4445014)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene zinc induced facilitator 1 Neighboring gene zinc induced facilitator-like 1 Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene AGAMOUS-like 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_121379.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Plasma-membrane choline transporter family protein
    NP_196880.2
    • Plasma-membrane choline transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT3G04440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4441858..4445014
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121379.4 → NP_196880.2  Plasma-membrane choline transporter family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196880.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G0T4, F4K425, Q8W4H3
      Conserved Domains (1) summary
      pfam04515
      Location:249 → 534
      Choline_transpo; Plasma-membrane choline transporter
    Nucleotide Protein
    Heading Accession and Version

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